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Texas Comptroller · Sales and Use Tax
A sales tax audit is won or lost in the sample.
The Comptroller's auditor will not look at every invoice. The auditor tests a slice of your records, finds an error rate, and multiplies it across four years of sales or purchases. A few missing resale certificates in the sample can become a six-figure assessment.
A Texas sales and use tax audit generally covers the last four years, the period for which you are required to keep records. The auditor examines transactions in full or by sampling and projects sample errors across the audit period. Results arrive in a Texas Notification of Audit Results. The assessment becomes final 60 days after the statement date on that notice, and a written request for a redetermination hearing, with a statement of grounds, must reach the Comptroller by that date to contest the audit without paying first.
How the audit runs
The process starts with a notice of routine audit and an entrance conference, where the auditor and the business agree on an audit plan, the records to be produced, and whether transactions will be reviewed in detail or by sample. Fieldwork follows. At the exit conference the auditor explains the proposed assessment, penalty, and interest.
Texas requires taxpayers to keep records for at least four years, and that is the usual audit period. The Comptroller can go back further when a business operated without a required permit or when fraud is suspected.
Why sampling matters so much
If a sample is used, the auditor must tell you and explain how errors will be projected. Everything after that depends on the sample being fair:
- The sample period or block should represent normal operations, not an unusual month or a one-time project.
- Missing resale and exemption certificates are the largest source of assessments. A sale to a reseller with no certificate on file is treated as taxable, then multiplied. Certificates can often still be obtained from customers during the audit, within the time the auditor allows.
- Use tax on purchases is the other half. Equipment, software, and supplies bought from out-of-state vendors that did not charge Texas tax are scheduled and projected the same way.
- Extraordinary items that distort the error rate can sometimes be removed from the sample and handled separately.
Ways to resolve disputes before the bill
- Reconciliation conference with the audit supervisor or manager.
- Independent Audit Review Conference (IARC). An informal meeting with a Comptroller reviewer who was not involved in the audit. It must be requested after fieldwork ends and before the audit is billed, it costs nothing, and you may bring an attorney or accountant. It is not available when records were not provided and the liability had to be estimated.
- Taxability guidance from the Comptroller's Tax Administration, when you and the auditor agree on the facts and disagree about the law.
Penalties and interest
Tax assessed in an audit is generally subject to a 10 percent penalty, and an additional 10 percent if it is not paid by the due date on the notification. Interest runs at the prime rate plus one percent, beginning 61 days after the tax was originally due. The Comptroller considers waiving penalty and interest in every audit, and a denied waiver can itself be contested. Where the Comptroller finds fraud or intent to evade, a much larger penalty applies and the four-year limit does not protect you.
What happens if you ignore it
The determination becomes final. Payment is due within 10 days after that, and another 10 percent penalty is added if it is not made. From there the Comptroller can file a state tax lien, freeze and levy bank accounts, suspend the sales tax permit, and pursue the people who ran the business personally.
When a lawyer matters
Early. The most valuable work happens before the exit conference: agreeing to a sample you can live with, gathering certificates, separating nontaxable items, and documenting the waiver request. After the notification issues, the work becomes a contested case with pleadings and a judge. An attorney's communications with you are privileged, which matters when the records show tax that was collected from customers and not sent to the state.
Official sources
The rules described on this page come from these primary sources. Check them, or the notice you received, for current figures and dates.
- Texas Comptroller: Understanding the audit process
- Texas Comptroller Publication 96-1253: Contesting Disagreed Audits, Examinations and Refund Denials (PDF)
- Texas Comptroller: Sales and use tax
- Texas Comptroller: Interest rates on delinquent taxes
- Texas Tax Code chapter 151: Limited Sales, Excise, and Use Tax
When to call
Call before the exit conference if:
- You received a Notice of Routine Audit or an audit questionnaire from the Comptroller.
- The auditor proposes a sample period that was unusually busy, slow, or different from normal.
- You sell to resellers or exempt customers and your certificate file has gaps.
- You bought equipment or software from out-of-state vendors and never accrued use tax.
- You received a Texas Notification of Audit Results and the final date is approaching.
- Sales tax was collected from customers and was not fully remitted.
Common questions
Direct answers.
How far back can the Texas Comptroller audit sales tax?
Generally four years, which is also how long Texas requires you to keep records. The Comptroller may audit a longer period if the business did not hold a required permit or if fraud is suspected.
What is sampling in a Texas sales tax audit?
Instead of reviewing every transaction, the auditor reviews a sample, calculates an error rate, and projects that rate across the whole audit period. If a sample is used, the auditor must notify you and explain how errors are projected.
How long do I have to contest a Texas sales tax audit?
The assessment becomes final 60 days after the statement date on the Texas Notification of Audit Results. A request for a redetermination hearing with a statement of grounds must be received by the Comptroller on or before that final date to contest the audit without paying first.
What if I missed the deadline to contest?
You can pay the entire liability, including penalty and interest, and request a refund hearing within six months after the final date. After six months, a refund claim can still be filed for periods within the four-year statute of limitations.
Can penalties and interest be waived in a Texas audit?
The Comptroller considers waiver in every audit and tells you its decision with the audit package. Waivers of penalty are usually limited to periods that were originally filed on time. A denied waiver can be contested in a redetermination hearing.
Can I get resale certificates after the audit starts?
Usually, yes. Texas allows a seller to obtain missing resale or exemption certificates during the audit, within the time limit the auditor sets in writing. Certificates delivered after that deadline are generally not accepted.
Related problems
State tax problems tend to travel together.
Redetermination Hearings & SOAH
Sixty days to contest a Comptroller assessment in writing. The case goes to a Comptroller attorney first, then to an administrative law judge if it does not settle.
Read more →Texas Franchise Tax
A missed franchise tax report can forfeit your company's right to do business and make its officers personally liable for company debts. It is usually fixable.
Read more →Personal Liability for Business Taxes
Sales tax you collected belongs to the state. If the business does not pay it over, Texas can come after the person who controlled the money.
Read more →Comptroller Liens, Freezes & Levies
The Comptroller can freeze a bank account for 60 days and levy it at any point in that window, without going to court. The account freeze is usually the first time an owner takes the debt seriously.
Read more →Next step
The best time to involve counsel is before the sample is chosen.
Send the audit notice and tell us what the auditor has asked for so far.